Prerequisites & Installation

Prerequisites

Flow2Spatial requires python >= 3.7.9.

"torch", "shapely", "cvxpy", "anndata",
"scipy", "numpy", "pandas"

Installation

pip install Flow2Spatial

Because Flow2Spatial requires Pytorch to train deep learning model, an additional installation step is needed. Please refer to https://pytorch.org/get-started/locally/ for customized installation. Pytorch version has been tested from 1.9.1 to 1.13.1. We recommand v1.13.1 as the version to install.

We also suggest to use a separate conda environment for installing Flow2Spatial.

conda create -y -n Flow2Spatial_env python=3.8.10
conda activate Flow2Spatial_env
pip install Flow2Spatial

Similarly, Pytorch also requires a additional customized installation (https://pytorch.org/get-started/locally/).